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| Preface | |
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| Acknowledgments | |
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| From reaction-diffusion to Physarum computing | |
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| Reaction-diffusion computers | |
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| Limitations of reaction-diffusion computers | |
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| Physarum polycephalum | |
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| Physarum as encapsulated reaction-diffusion computer | |
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| Dawn of Physarum computing | |
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| Experimenting with Physarum | |
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| Where to get Plasmodium of P. polycephalum | |
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| Physarum farms | |
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| Dishes and scanners | |
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| Data input with food | |
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| Substrates | |
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| Nutrient-rich vs. non-nutrient substrates | |
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| Sensing | |
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| Modeling Plasmodium | |
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| Summary | |
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| Physarum solves mazes | |
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| Multiple-site start | |
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| Single-site start | |
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| Summary | |
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| Plane tessellation | |
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| The ubiquitous diagram | |
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| Physarum construction of Voronoi diagram | |
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| Summary | |
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| Oregonator model of Physarum growing trees | |
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| What a BZ medium could not do | |
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| Physarum and Oregonator | |
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| Building trees with Oregonator | |
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| Validating simulation by experiments | |
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| Summary | |
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| Does the Plasmodium follow Toussaint hierarchy? | |
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| Proximity graphs | |
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| Nearest-neighborhood graph | |
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| Minimal spanning tree | |
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| Relative neighborhood graph | |
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| Gabriel graph | |
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| Delaunay triangulation | |
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| Toussaint hierarchy | |
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| Plasmodium network and Toussaint hierarchy | |
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| Preparing for graph growing | |
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| Growing graph from a single point | |
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| Growing from all points | |
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| Physarum hierarchy | |
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| Summary | |
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| Complexity of Plasmodium computation | |
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| Halting problem | |
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| Reusability | |
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| Further studies | |
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| Physarum gates | |
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| XOR gate anyone? | |
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| Ballistics of Physarum localizations | |
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| Physarum gates | |
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| Simulation of Physarum gates | |
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| Simulated one-bit half-adder | |
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| Why do we use a non-nutrient substrate? | |
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| Summary | |
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| Kolmogorov-Uspensky machine in plasmodium | |
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| Physarum machines | |
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| Materials for Physarum machine | |
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| Nodes | |
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| Edges | |
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| Data, results and halting | |
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| Active zone | |
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| Bounded connectivity | |
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| Addressing and labeling | |
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| Basic operations | |
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| Example of Physarum machine solving simple task | |
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| On parallelism | |
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| Summary | |
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| Reconfiguring Physarum machines with attractants | |
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| Fusion and multiplication of active zones | |
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| Translating active zone | |
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| Reconfiguration of Physarum machine | |
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| Summary | |
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| Programming Physarum machines with light | |
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| Physarum and light | |
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| Designing control domains | |
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| Trees and waves | |
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| Diverting plasmodium | |
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| Inertia | |
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| Multiplying plasmodium waves | |
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| Foraging around obstacles | |
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| Routing signals in Physarum machine | |
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| Disobedience | |
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| Summary | |
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| Routing Physarum with repellents | |
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| Avoiding repellents on nutrient-rich substrate | |
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| Operating on non-nutrient substrate | |
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| Operation Deflect | |
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| Operation Multiply | |
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| Operation Merge | |
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| Summary | |
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| Physarum manipulators | |
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| Plasmodium on water surface | |
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| Manipulating floating objects | |
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| Summary | |
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| Physarum boats | |
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| Random wandering | |
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| Sliding | |
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| Pushing | |
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| Anchoring | |
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| Propelling | |
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| Cellular automaton model | |
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| Physarum tugboat | |
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| On failures | |
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| Summary | |
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| Manipulating substances with Physarum machine | |
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| Operations with colored substances | |
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| Transfer of substances to specified location | |
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| Mixing substances | |
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| Superpositions of Transfer and Mix operations | |
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| Summary | |
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| Road planning with slime mould | |
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| United Kingdom in a gel | |
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| Development of transport links | |
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| Weighted Physarum graphs | |
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| Physarum vs. Department for Transport | |
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| Proximity graphs and motorways | |
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| Imitating disasters | |
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| Summary | |
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| Epilogue | |
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| Bibliography | |
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| Index | |
